Stem-loop sequence bta-mir-3432a-1

Accession

MI0014500 (change log)

Previous IDs

bta-mir-3432-1

Description

Bos taurus miR-3432a-1 stem-loop

Gene family

MIPF0001187; mir-3432

Literature search

3 open access papers mention bta-mir-3432a-1
(4 sentences)

Stem-loop

   -c           -      ugu  g       --u     ug -  u ca 
5'   uucgaucuuug ucaugg   gc ggaucuu   aguug  g ug g  a
     ||||||||||| ||||||   || |||||||   |||||  | || |   
3'   agguuaggaac aguacc   ug ccuaggg   ucgac  u ac c  a
   cc           c      --u  a       ugu     gu g  u uc 

Deep sequencing

4698 reads, 11.8 reads per million, 68 experiments

Confidence

Annotation confidence: not enough data

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Comments

Jin et al. predicted this miRNA bioinformatically in [1], and validated its expression by qPCR in [2].

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr21: 55992009-55992105 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000028388 ; TP53BP1-201; intron 3

Database links

• EntrezGene:MIR3432-1
• RNAcentral:URS0000759C2C_9913
• miRBase Tracker:MI0014500

Mature sequence bta-miR-3432a

• Accession: MIMAT0017396
• Previous IDs: bta-miR-3432
• Sequence: 21 - ugcgggaucuuuaguuguggug - 42
• Deep sequencing: 9409 reads, 68 experiments
• Evidence: experimental; qPCR [2], Illumina [3]
• Predicted targets:
  • TargetScanVert:bta-miR-3432a

References

1. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).
2. PMID:20423511 "Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development" Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL BMC Mol Biol. 11:29(2010).