Stem-loop aly-MIR164c

Accession

MI0014529

Description

Arabidopsis lyrata aly-MIR164c precursor miRNA

Gene family

MIPF0000045; MIR164

Sequence

37 reads, 1290 reads per million, 1 experiments

gggugaguaacacuugaUGGAGAAGCAGGGCACGUGCGaacacaaaugagaucgaucgguacaugaugaucauauuuucgCACGUGUUCUACUCCUCCAACacgugucucucccc
(((.(((..((((.((.(((((.((.((((((((((((((....((((.((((.((((.....)))))))).)))))))))))))))))).)).))))).)).))))..))))))

Structure

   u   ua    u  a     A  C              caca    a    g    g 
ggg gag  acac ug UGGAG AG AGGGCACGUGCGaa    aaug gauc aucg u
||| |||  |||| || ||||| || ||||||||||||||    |||| |||| |||| a
ccc cuc  ugug aC ACCUC UC UCUUGUGCACgcuu    uuau cuag uagu c
   -   uc    c  A     C  A              ----    a    -    a 

Annotation confidence Not enough data

Genome context

GL348718.1: 12607212-12607326 [-]

Mature aly-miR164c-5p

• Accession: MIMAT0017453
• Description: Arabidopsis lyrata aly-miR164c-5p mature miRNA
• Sequence: 18 - UGGAGAAGCAGGGCACGUGCG - 38
• Evidence: experimental ; Illumina [1]

Mature aly-miR164c-3p

• Accession: MIMAT0017454
• Description: Arabidopsis lyrata aly-miR164c-3p mature miRNA
• Sequence: 81 - CACGUGUUCUACUCCUCCAAC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089