Accession
MI0014581
Description
Arabidopsis lyrata
aly-MIR396a precursor miRNA
Gene family
MIPF0000047;
MIR396
Sequence
876
reads,
30544
reads per million, 1 experiments
ucuacgugacccucucuguauucUUCCACAGCUUUCUUGAACUGcaaaacuucuucagauuuguuuuuuuuauauauaugucuuacgcauaaaauaguguuuuuguucacaucucugcucgauugauuugcgGUUCAAUAAAGCUGUGGGAAGauacggacagagucaaaga
......((((.((.((((((((.((((((((((((.((((((((((((.(.((..((((..(((.......((((.(((((.....))))).....))))........)))..))))...))..).)))))))))))).)))))))))))).)))))))).)).))))....
......((((.((.((((((((.((((((((((((.((((((((((((.(.((..((((..(((.......((((.(((((.....))))).....))))........)))..))))...))..).)))))))))))).)))))))))))).)))))))).)).))))....
Structure
ucuacg c c c C a -u -uu uu -uuuuuuu ----a c
ugac cu ucuguauu UUCCACAGCUUU UUGAACUGcaaa c uc caga ugu auau uaugu u
|||| || |||||||| |||||||||||| |||||||||||| | || |||| ||| |||| ||||| u
acug ga aggcauaG AGGGUGUCGAAA AACUUGgcguuu g ag gucu aca ugug auacg a
--agaa a c A U a uu cuc cu cuuguuuu auaaa c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
GL348715.1: 17432895-17433066 [-]
Database links
Mature aly-miR396a-5p
| Accession | MIMAT0017557 |
| Description | Arabidopsis lyrata aly-miR396a-5p mature miRNA |
| Sequence | 24 - UUCCACAGCUUUCUUGAACUG - 44 |
| Evidence |
experimental
Illumina [1] |
| Database links |
|
Mature aly-miR396a-3p
| Accession | MIMAT0017558 |
| Description | Arabidopsis lyrata aly-miR396a-3p mature miRNA |
| Sequence | 133 - GUUCAAUAAAGCUGUGGGAAG - 153 |
| Evidence |
experimental
Illumina [1] |
| Database links |
|
References
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