Stem-loop aly-MIR835

Accession

MI0014611

Description

Arabidopsis lyrata aly-MIR835 precursor miRNA

Gene family

MIPF0001136; MIR835

Sequence

gaugcaaugcuagauggucaucuuugugguuaagcucuUUCUUGCAUAUGUUCUUUAUCucuauugauugauauuuuucagcgagcaacauuauauauauauauauauauuuuaccuggauuuguaagauaauuuuuagauuucucgacguuauacgcaacauuauaauuucuguuguagucaacuucugcugcaacccauccacaaagcuuaucaugcgagauuaaacacuuucucgauggguugcaauagaacaucacuaaaauagaagugauauuguuuggaaaaacgucaaagaaccgauaucuuauaaacaucuuacaaauccagguagaagagaauaugagguugcuuguugaaaauaacaaucuauaaauuUGAAGAAGAUACGCAAGAAAGaguucuaaacacaaagcugaucaaacauucuauuugaagaguu
..............((((((.(((((((..(((((((((((((((.(((.(((((((....(((.(((((.((((((.(((((((((((.((((((.............(((((((((((((((((((((.......((((((((.((((((...(..((((.(((.(((((((((.((((....(((((.(((((((((((......((.......))((((..........))))))))))))))).)))))....)))).))))))))).))).))))..)...))))))..)))).....)))).......)))))))))))))))))))))....)))))).))))))))))))))))).))))).)))....))))))).))).))))))))))))).))..))))))).))))))...(((((......))))).

Structure

------gaugcaaugcuaga      u       gu  -             A   G       UCuc   u     a      u           a      auauauauauaua                     aauuuuu    -----    -c      aua gc    u   a         g    caac     c           cacaaagcuuaucaug 
                    ugguca cuuugug  ua agcucuUUCUUGC UAU UUCUUUA    uau gauug uauuuu cagcgagcaac uuauau             uuuuaccuggauuuguaagau       agau     uucu  gacguu   c  aaca uau auuucuguu uagu    uucug ugcaacccauc                c
                    |||||| |||||||  || ||||||||||||| ||| |||||||    ||| ||||| |||||| ||||||||||| ||||||             |||||||||||||||||||||       ||||     ||||  ||||||   |  |||| ||| ||||||||| ||||    ||||| |||||||||||                g
                    acuagu gaaacac  au uugaGAAAGAACG AUA AAGAAGU    aua cuaac auaaaa guuguucguug aguaua             aagauggaccuaaacauucua       ucua     aaga  cugcaa   g  uugu aua ugaagauaa auca    aagau acguuggguag                a
uugagaaguuuaucuuacaa      c       aa  c             C   G       uuaa   u     a      -           g      ---------agag                     caaauau    uagcc    aa      aaa gu    u   g         a    cuac     a           cucuuucacaaauuag 

Annotation confidence Not enough data

Genome context

GL348714.1: 16982982-16983423 [-]

Mature aly-miR835-5p

• Accession: MIMAT0017619
• Description: Arabidopsis lyrata aly-miR835-5p mature miRNA
• Sequence: 39 - UUCUUGCAUAUGUUCUUUAUC - 59
• Evidence: experimental ; Illumina [1]

Mature aly-miR835-3p

• Accession: MIMAT0017620
• Description: Arabidopsis lyrata aly-miR835-3p mature miRNA
• Sequence: 379 - UGAAGAAGAUACGCAAGAAAG - 399
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089