miRBase entry: aly-MIR844

Stem-loop aly-MIR844


Accession
MI0014616
Description
Arabidopsis lyrata aly-MIR844 precursor miRNA
Gene family
MIPF0001197; MIR844


Sequence

171 reads, 5858 reads per million, 1 experiments
gaguauaaaguuguaaguugguuugaugaaucuuuuagauugaagaaaAGAAGGACUAGUAAGAUGGCUuauaagcuggauuuugagagugagugagcucuucuacgcauuggcuuauaagCCAUCUUACUAGUCUUUCUUUucuucaauguggggaucauaacaguuuuaaggaaugucuc
(((.(((...((..((((((.....((((.(((((.(.(((((((((((((((((((((((((((((((((((((((((.....((((((......)))))).......))))))))))))))))))))))))))))))))))))))))).))))))))))..))))))..))...))))))

Structure
   u   aag  gu      guuug    a     u g                                         --auuuu      ga 
gag aua   uu  aaguug     auga ucuuu a auugaagaaaAGAAGGACUAGUAAGAUGGCUuauaagcugg       gagagu  g
||| |||   ||  ||||||     |||| ||||| | |||||||||||||||||||||||||||||||||||||||||       ||||||   
cuc ugu   ga  uuugac     uacu agggg u uaacuucuUUUCUUUCUGAUCAUUCUACCgaauauucgguu       uucucg  u
   -   aag  au      ---aa    -     - g                                         acgcauc      ag 


Annotation confidence Not enough data
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Genome context
GL348716.1: 1803605-1803786 [-]

Database links

Mature aly-miR844-5p

Accession MIMAT0017629
Description Arabidopsis lyrata aly-miR844-5p mature miRNA
Sequence 49 - AGAAGGACUAGUAAGAUGGCU - 69
Evidence experimental
Illumina [1]
Database links

Mature aly-miR844-3p

Accession MIMAT0017630
Description Arabidopsis lyrata aly-miR844-3p mature miRNA
Sequence 122 - CCAUCUUACUAGUCUUUCUUU - 142
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089