Stem-loop aly-MIR852

Accession

MI0014621

Description

Arabidopsis lyrata aly-MIR852 precursor miRNA

Gene family

MIPF0001126; MIR852

Sequence

gcucaaagcucAGAACAAAGGCGCUUAUCUUAUggauauaucaaagAAGAUAAGCGCCUUAGUUCUGAagauaagc
(((...)))(((((((.((((((((((((((...((....))....)))))))))))))).)))))))........

Structure

gcucaaagc       A              -AUg  u 
         ucAGAAC AAGGCGCUUAUCUU    ga a
         ||||||| ||||||||||||||    ||  
         AGUCUUG UUCCGCGAAUAGAA    cu u
-cgaauaga       A              gaaa  a 

Annotation confidence Not enough data

Genome context

GL348719.1: 14005518-14005593 [-]

Mature aly-miR852-5p

• Accession: MIMAT0017639
• Description: Arabidopsis lyrata aly-miR852-5p mature miRNA
• Sequence: 12 - AGAACAAAGGCGCUUAUCUUAU - 33
• Evidence: experimental ; Illumina [1]

Mature aly-miR852-3p

• Accession: MIMAT0017640
• Description: Arabidopsis lyrata aly-miR852-3p mature miRNA
• Sequence: 47 - AAGAUAAGCGCCUUAGUUCUGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089