Stem-loop aly-MIR857

Accession

MI0014623

Description

Arabidopsis lyrata aly-MIR857 precursor miRNA

Gene family

MIPF0001180; MIR857

Sequence

cucaaaauuucuaauauuuucgacugcuacaacAAACUUUCACCAUACAAAAUAaucaagaaaaacacucaaaaagauugaaugugugagguuagucucauuaacggaauugugaacaauuuuguuaaaaaauagugacuugguuuucaaauguauuuuuuuaaagaauaauguuuuuuagcuuuuuauuauauaucaacaugagaccucagguaacaagguaaaagagacagaaaaauaaaaaaauuuaauuuuuucaaguuuauaguuuauaguaaagaaguuuuuuuuuuuuuugaaaaauauauuuuaaaacagugucacuauuuuaaacggcaaauggacauuucuauuaaugagauuaaugucgagcauuuggauuucuauuugaguacuuuuuguuucuaaguuaUUUUGUAUGUUGAAGGUGUAUuguaggaaucggaaacaucaacucucaagauuuuuaugag
(((((((..(((....(((((((.(.((((((...(((((((.(((((((((((((..(((((...(((((((.(((((((((((.(((.((((((((((((((.((((..(((..((..((((((..(((((((((((...(((((.(((((((((((((.((((((...........(((((((((((((((((.(((.(((.((((..(....).))))..........(((((.((((....)))).)))))))).))).)))...)))))).)))))))).....)))))).))))))))))))).)))))...)))))))))))....))))))))..))))))).)))))))))))))).))).))))))))...))).)))))))........)))))..))))))))))))).)))))))...)))))).).)))))))............)))..))).))))

Structure

    -   uu   --------aaua       c g      cAA       C             ca     -----aac       a   ---        g   g              c    uu   aa  au      --aa           uug     c             u      uaauguuuuuu        -      ---   c   a   gaccucagguaacaagguaaaagagaca     a    a 
cuca aaa  ucu            uuuucga u cuacaa   ACUUUCA CAUACAAAAUAau  agaaa        acucaaa aga   uugaaugu uga guuagucucauuaa ggaa  gug  ca  uuuguu    aaaauagugac   guuuu aaauguauuuuuu aaagaa           agcuuuuu auuaua   uau aac uga                            gaaaa uaaa a
|||| |||  |||            ||||||| | ||||||   ||||||| |||||||||||||  |||||        ||||||| |||   |||||||| ||| |||||||||||||| ||||  |||  ||  ||||||    |||||||||||   ||||| ||||||||||||| ||||||           |||||||| ||||||   ||| ||| |||                            ||||| ||||  
gagu uuu  aga            aaaggcu a gauguU   UGGAAGU GUAUGUUUUauug  ucuuu        ugaguuu ucu   gguuuacg gcu uaauuagaguaauu ucuu  uac  gu  aaacgg    uuuuaucacug   caaaa uuuauauaaaaag uuuuuu           uugaagaa ugauau   aua uug acu                            uuuuu auuu a
    a   uu   acucucaacuac       a g      AUG       U             aa     guuuuuca       a   uua        a   g              a    --   ag  --      caaa           uga     u             u      ------uuuuu        a      uug   u   a   ----------------------------     a    a 

Annotation confidence Not enough data

Genome context

GL348719.1: 14977807-14978279 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR857

Mature aly-miR857-5p

• Accession: MIMAT0017643
• Description: Arabidopsis lyrata aly-miR857-5p mature miRNA
• Sequence: 34 - AAACUUUCACCAUACAAAAUA - 54
• Evidence: experimental ; Illumina [1]

Mature aly-miR857-3p

• Accession: MIMAT0017644
• Description: Arabidopsis lyrata aly-miR857-3p mature miRNA
• Sequence: 413 - UUUUGUAUGUUGAAGGUGUAU - 433
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089