Accession
MI0014640
Description
Arabidopsis lyrata
aly-MIR163 precursor miRNA
Gene family
MIPF0001116;
MIR163
Sequence
8
reads,
244
reads per million, 1 experiments
gugggagacaaguaccuucgagaaaccggccaaaacccgguggauaaaauCGAGUUCCAGCCUCCUCAGAGACUUUAGCAACAACGAUUUCaacacucucuuacaggaacuuccuccaggcagaagauacugucuugcgaaguuccggguuccuucuucguccgugagucaugaucaagauacgcuuucuugaccacaugguugaaccagugcaaugcauguugcuguuccacaugggagagucgcgguuuuugaucccuuuggggauuuuggaggugaaauggaacgcguaauugaugacuccuauguggaaacucuuaugucgaagaaggaaccgcgauuuugcuaauccaagugcuuaAAUCGUUGAGGCUGAAGUCGUUGAAGAGGACUUGGAACUCGAUCuuauccaccgcguuuuauccgguuucucuguggguugugaaauauuuuau
.......(((...((((.(((((((((((..(((((.((((((((((.((((((((((((((((.((((.(((((((((..(((((((((...((((........((((((((....((((((......))))))...)))))))).(((((((((((((..((((((...((.((((((.......)))))).))..((((...))))..(((((....)))))..(((((((((((((.(((((((((((...(((((((((.....))))))).))...))))).)))....)))..)))))))))))))...)))))).)))))))))))))(((....))).......))))...)))))))))..))))))))).)))).)))).).))))))))))).)))))))))).)))))..)))))))))).).)))))))............
.......(((...((((.(((((((((((..(((((.((((((((((.((((((((((((((((.((((.(((((((((..(((((((((...((((........((((((((....((((((......))))))...)))))))).(((((((((((((..((((((...((.((((((.......)))))).))..((((...))))..(((((....)))))..(((((((((((((.(((((((((((...(((((((((.....))))))).))...))))).)))....)))..)))))))))))))...)))))).)))))))))))))(((....))).......))))...)))))))))..))))))))).)))).)))).).))))))))))).)))))))))).)))))..)))))))))).).)))))))............
Structure
-----gugggag agu u - cc c a - - C A AA Caa cucuuacaggaacuuccuccaggcagaagauacugucuugcgaaguuccg uc ucaugaucaagauacgcuuucuugaccacaugguugaaccagugcaaugcauguugcug -a ---- - uga - g
aca accu c gagaaaccgg aaaac cgguggauaa auCGAGUUCCA G CCUC UCAG GACUUUAGC CAACGAUUU cacu gguuccuucuucg cgugag uuccacaugggag guc gcg guuuu uc ccuuugg g
||| |||| | |||||||||| ||||| |||||||||| ||||||||||| | |||| |||| ||||||||| ||||||||| |||| ||||||||||||| |||||| ||||||||||||| ||| ||| ||||| || ||||||| a
ugu uggg g cucuuuggcc uuuug gccaccuauu UAGCUCAAGGU C GGAG AGUU CUGAAGUCG GUUGCUAAa guga ccaaggaagaagc guauuc aagguguauccuc uag ugc caagg ag ggagguu u
uauuuuauaaag --- u u ua c C U A A G GA uuc ---------------------------------accuaaucguuuuagcg -u --------------------------------------------------------uca ag uuaa g uaa u u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
GL348714.1: 11750816-11751270 [+]
Database links
Mature aly-miR163-5p.1
| Accession | MIMAT0017677 |
| Description | Arabidopsis lyrata aly-miR163-5p.1 mature miRNA |
| Sequence | 51 - CGAGUUCCAGCCUCCUCAGA - 70 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR163-5p.2
| Accession | MIMAT0017678 |
| Description | Arabidopsis lyrata aly-miR163-5p.2 mature miRNA |
| Sequence | 71 - GACUUUAGCAACAACGAUUUC - 91 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR163-3p.2
| Accession | MIMAT0017679 |
| Description | Arabidopsis lyrata aly-miR163-3p.2 mature miRNA |
| Sequence | 362 - AAUCGUUGAGGCUGAAGUCGU - 382 |
| Evidence |
experimental
Illumina [1] |
Mature aly-miR163-3p.1
| Accession | MIMAT0017680 |
| Description | Arabidopsis lyrata aly-miR163-3p.1 mature miRNA |
| Sequence | 383 - UGAAGAGGACUUGGAACUCGAUC - 405 |
| Evidence |
experimental
Illumina [1] |
References
|
