Stem-loop aly-MIR3441

Accession

MI0014657

Description

Arabidopsis lyrata aly-MIR3441 precursor miRNA

Sequence

40 reads, 1395 reads per million, 1 experiments

guaguuuuugaucuucagCGAAGAAAAUGAAGUCGUUUUgcUUCAAAGCAUCUUUGAAGGAAgggaaaguuaccaacuaacguuuaguagcuacucaagcauuauugacuucacucauaggaguggaacuaggauaugaaugcuuucuaugaguuugugaagaaagcaauuaguuuuggugcuacuaaacgucaauugguaacuuucacuuCCCUCAAUGAUGUUUUGAAGCaaAACGACUUCAUCUUCUUUGCUgaagaucauaaacuac
(((((((.(((((((((((((((((.((((((((((((((((((((((((((.((((.(((((.((((((((((((...((((((((((((...((((......)))).(((((((....)))))))((((((((.(((.((((((((............)))))))).)))))))))))))))))))))))...)))))))))))).))))).)))).)))))))))))))))))))))))))).))))))))))))))))).)))))))

Structure

       u                 A                          U    A     g            cua            uacucaagcauuauugacuucacucauaggagugga        a   a        augag 
guaguuu ugaucuucagCGAAGAA AUGAAGUCGUUUUgcUUCAAAGCAUC UUGA GGAAg gaaaguuaccaa   acguuuaguagc                                    acuaggau uga ugcuuucu     u
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||   ||||||||||||                                    |||||||| ||| ||||||||      
caucaaa acuagaagUCGUUUCUU UACUUCAGCAAaaCGAAGUUUUGUAG AACU CCuuc cuuucaaugguu   ugcaaaucaucg                                    ugguuuug auu acgaaaga     u
       u                 C                          U    C     a            aac            ------------------------------------        -   a        agugu 

Annotation confidence Not enough data

Genome context

GL348713.1: 2062168-2062438 [+]

Mature aly-miR3441-5p.2

• Accession: MIMAT0017713
• Description: Arabidopsis lyrata aly-miR3441-5p.2 mature miRNA
• Sequence: 19 - CGAAGAAAAUGAAGUCGUUUU - 39
• Evidence: experimental ; Illumina [1]

Mature aly-miR3441-5p.1

• Accession: MIMAT0017714
• Description: Arabidopsis lyrata aly-miR3441-5p.1 mature miRNA
• Sequence: 42 - UUCAAAGCAUCUUUGAAGGAA - 62
• Evidence: experimental ; Illumina [1]

Mature aly-miR3441-3p.1

• Accession: MIMAT0017715
• Description: Arabidopsis lyrata aly-miR3441-3p.1 mature miRNA
• Sequence: 212 - CCCUCAAUGAUGUUUUGAAGC - 232
• Evidence: experimental ; Illumina [1]

Mature aly-miR3441-3p.2

• Accession: MIMAT0017716
• Description: Arabidopsis lyrata aly-miR3441-3p.2 mature miRNA
• Sequence: 235 - AACGACUUCAUCUUCUUUGCU - 255
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089