Stem-loop sequence aly-MIR3441

Accession

MI0014657 (change log)

Description

Arabidopsis lyrata miR3441 stem-loop

Stem-loop

          u                 a                          u    a     g            c a            u   c    auuauugacuucacucauaggaguggaacuaggau 
5' guaguuu ugaucuucagcgaagaa augaagucguuuugcuucaaagcauc uuga ggaag gaaaguuaccaa u acguuuaguagc acu aagc                                   a
   ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||| | |||||||||||| ||| ||||                                    
3' caucaaa acuagaagucguuucuu uacuucagcaaaacgaaguuuuguag aacu ccuuc cuuucaaugguu a ugcaaaucaucg ugg uuug                                   u
          u                 c                          u    c     a            a c            -   u    auuaacgaaagaaguguuugaguaucuuucguaag 

Deep sequencing

45 reads, 1.1e+03 reads per million, 1 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (v1.0; GCA_000004255.1): GL348713.1: 2062168-2062438 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0014657

Mature sequence aly-miR3441-5p.2

• Accession: MIMAT0017713
• Previous IDs: aly-miR3441.2*
• Sequence: 19 - cgaagaaaaugaagucguuuu - 39
• Deep sequencing: 7 reads, 1 experiments
• Evidence: experimental; Illumina [1]

Mature sequence aly-miR3441-5p.1

• Accession: MIMAT0017714
• Previous IDs: aly-miR3441.1
• Sequence: 42 - uucaaagcaucuuugaaggaa - 62
• Deep sequencing: 20 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004CFF61_59689

Mature sequence aly-miR3441-3p.1

• Accession: MIMAT0017715
• Previous IDs: aly-miR3441.1*
• Sequence: 212 - cccucaaugauguuuugaagc - 232
• Deep sequencing: 13 reads, 1 experiments
• Evidence: experimental; Illumina [1]

Mature sequence aly-miR3441-3p.2

• Accession: MIMAT0017716
• Previous IDs: aly-miR3441.2
• Sequence: 235 - aacgacuucaucuucuuugcu - 255
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).