miRBase entry: ssc-mir-22

Stem-loop ssc-mir-22


Accession
MI0014770
Description
Sus scrofa ssc-mir-22 precursor miRNA
Gene family
MIPF0000053; mir-22

Literature search
13 open access papers mention ssc-mir-22
(33 sentences)

Sequence

575 reads, 249 reads per million, 11 experiments
gagccgcaguAGUUCUUCAGUGGCAAGCUUUAuguccugacccagcuaAAGCUGCCAGUUGAAGAACUGUugcccucugc
(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).)))...

Structure
---   cc               -     A      u  ccu 
   gag  gcaguAGUUCUUCAG UGGCA GCUUUA gu   g
   |||  ||||||||||||||| ||||| |||||| ||   a
   cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
cgu   -c               G     -      -  acc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssc-miR-22-5p

Accession MIMAT0015709
Description Sus scrofa ssc-miR-22-5p mature miRNA
Sequence 11 - AGUUCUUCAGUGGCAAGCUUUA - 32
Evidence experimental
Illumina [1,3-4]

Mature ssc-miR-22-3p

Accession MIMAT0015710
Description Sus scrofa ssc-miR-22-3p mature miRNA
Sequence 49 - AAGCUGCCAGUUGAAGAACUGU - 70
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100