Stem-loop sequence ssc-mir-363-1

Accession

MI0014771 (change log)

Previous IDs

ssc-mir-363

Description

Sus scrofa miR-363-1 stem-loop

Gene family

MIPF0000138; mir-363

Literature search

6 open access papers mention ssc-mir-363-1
(20 sentences)

Stem-loop

   -  u   gu         ca  a         --ga   gu 
5'  gc guu  cggguggau  cg ugcaauuuu    uua  a
    || |||  |||||||||  || |||||||||    |||   
3'  cg caa  gucuaccua  gc acguuaaaa    gau  u
   a  c   au         ug  -         agag   ac 

Deep sequencing

264 reads, 0 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 126199347-126199426 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-363-1

• ssc-mir-106a: chrX: 126200183-126200263 [-]
• ssc-mir-18b: chrX: 126200019-126200101 [-]
• ssc-mir-20b-1: chrX: 126199775-126199854 [-]
• ssc-mir-19b-2: chrX: 126199650-126199729 [-]
• ssc-mir-92a-2: chrX: 126199512-126199591 [-]
• ssc-mir-363-1: chrX: 126199347-126199426 [-]

Database links

• EntrezGene:MIR363
• miRBase Tracker:MI0014771

Mature sequence ssc-miR-363

• Accession: MIMAT0015711
• Sequence: 52 - aauugcacgguauccaucuguaa - 74
• Deep sequencing: 528 reads, 13 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
3. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).