Stem-loop sequence gga-mir-3524a

Accession

MI0015376 (change log)

Previous IDs

gga-mir-3524

Description

Gallus gallus miR-3524 stem-loop

Gene family

MIPF0001215; mir-3524

Stem-loop

    ug   -u    uuaag   c  ac  a  -   a       a       c    ucua 
5' c  gau  aucu     guc cu  ca cc cgg ccauucu ugauucu ugau    a
   |  |||  ||||     ||| ||  || || ||| ||||||| ||||||| ||||     
3' g  cua  uagg     cag ga  gu gg guc gguaaga gcuaaga acua    a
    gu   cc    -ucua   a  aa  c  a   -       c       c    uuga 

Deep sequencing

117 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 105832017-105832132 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-3524a

• gga-mir-3525: chr1: 105832033-105832116 [+]
• gga-mir-3524a: chr1: 105832017-105832132 [-]

Database links

• EntrezGene:MIR3524
• miRBase Tracker:MI0015376

Mature sequence gga-miR-3524a

• Accession: MIMAT0016374
• Previous IDs: gga-miR-3524
• Sequence: 68 - cagaaucgcagaauggcugagg - 89
• Deep sequencing: 77 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-3524a
  • miRDB:gga-miR-3524a

References

1. PMID:19891781 "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach" Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H BMC Genomics. 10:512(2009).