Stem-loop gga-mir-3525

Accession

MI0015384

Description

Gallus gallus gga-mir-3525 precursor miRNA

Gene family

MIPF0001215; mir-3524

Literature search

2 open access papers mention gga-mir-3525
(11 sentences)

Sequence

6849 reads, 119 reads per million, 5 experiments

gucucuuucagccuCAGCCAUUCUGCGAUUCUGUGAuaacuuuuagaaucagagaaucauagaaugguccggguugguagggac
((((((.(((((((..(((((((((.((((((.((((..........)))).)))))).)))))))))..))))))).))))))

Structure

      u       CA         C      G    aacu 
gucucu ucagccu  GCCAUUCUG GAUUCU UGAu    u
|||||| |||||||  ||||||||| |||||| ||||     
caggga gguuggg  ugguaagau cuaaga acua    u
      u       cc         a      g    agau 

Annotation confidence High

Genome context

chr1: 105832033-105832116 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-3525

Mature gga-miR-3525

• Accession: MIMAT0016382
• Description: Gallus gallus gga-miR-3525 mature miRNA
• Sequence: 15 - CAGCCAUUCUGCGAUUCUGUGA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512