Stem-loop gga-mir-3533

Accession

MI0015386

Description

Gallus gallus gga-mir-3533 precursor miRNA

Gene family

MIPF0002063; mir-3533

Sequence

73 reads, 4 reads per million, 4 experiments

gguauggaguccugugguauccaugaaacuaccuucaacuccaucAUGAAGUGUGAUGUGGAUAUccguaaggaucuguaugcc
((((((.((((((.((((((((((...((...(((((.........))))).))...))))))).)))..)))).)).))))))

Structure

      g  -    -g   -       gaa  uac     acu 
gguaug ag uccu  ugg uauccau   ac   cuuca   c
|||||| || ||||  ||| |||||||   ||   |||||   c
ccguau uc agga  gcc AUAGGUG   UG   GAAGU   a
      g  u    au   U       UAG  --U     Acu 

Annotation confidence Not enough data

Genome context

chr14: 4192483-4192566 [-]

Mature gga-miR-3533

• Accession: MIMAT0016384
• Description: Gallus gallus gga-miR-3533 mature miRNA
• Sequence: 46 - AUGAAGUGUGAUGUGGAUAU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512