Stem-loop gga-mir-3538

Accession

MI0015391

Description

Gallus gallus gga-mir-3538 precursor miRNA

Sequence

519 reads, 12 reads per million, 5 experiments

gcaGUUCGGUGAUGAAACCAUGGAauaagcgcugggcacagcgccugacauccgugaggagucguuccaugcugc
(((((..((.(((((..(((((((.((.((((((....)))))).))...)))))).)...)))))))..)))))

Structure

     UC  U     -AA -      --a  a      g 
gcaGU  GG GAUGA   C CAUGGA   ua gcgcug g
|||||  || |||||   | ||||||   || ||||||  
cgucg  cc uugcu   g gugccu   gu cgcgac c
     ua  -     gag a      aca  c      a 

Annotation confidence Not enough data

Genome context

Unknown

Mature gga-miR-3538

• Accession: MIMAT0016389
• Description: Gallus gallus gga-miR-3538 mature miRNA
• Sequence: 4 - GUUCGGUGAUGAAACCAUGGA - 24

References

1. PubMed ID: 19891781
   Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
   Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
   BMC Genomics (2009) 10:512