Stem-loop cin-mir-3598

Accession

MI0015484

Description

Ciona intestinalis cin-mir-3598 precursor miRNA

Sequence

10929 reads, 4412 reads per million, 2 experiments

UCACAGUGGUUAUAUACUGCcugugguauuuacgaacAUGCAGUAUAUCCAUCGUGC
.(((.((((..(((((((((.(((.((....))..))).))))))))))))).))).

Structure

U   A    UU         c   -g  a 
 CAC GUGG  AUAUACUGC ugu  gu u
 ||| ||||  ||||||||| |||  ||  
 GUG UACC  UAUAUGACG Aca  ca u
C   C    --         U   ag  u 

Annotation confidence Not enough data

Genome context

14q: 1335804-1335860 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-3598

Mature cin-miR-3598-5p

• Accession: MIMAT0016399
• Description: Ciona intestinalis cin-miR-3598-5p mature miRNA
• Sequence: 1 - UCACAGUGGUUAUAUACUGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-3598-3p

• Accession: MIMAT0016400
• Description: Ciona intestinalis cin-miR-3598-3p mature miRNA
• Sequence: 38 - AUGCAGUAUAUCCAUCGUGC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39