Stem-loop cin-mir-4001d

Accession

MI0015515

Description

Ciona intestinalis cin-mir-4001d precursor miRNA

Sequence

1725 reads, 569 reads per million, 2 experiments

UGGAACUUGUUUUGAACAGGcuucaaccagaccaugaGCCUGCUCAAACUAGUUCUCGU
.((((((.((((.((.(((((((............))))))).)))))).))))))...

Structure

--U      U    U  A       caacc 
   GGAACU GUUU GA CAGGcuu     a
   |||||| |||| || |||||||      
   UCUUGA CAAA CU GUCCGag     g
UGC      U    -  C       uacca 

Annotation confidence Not enough data

Genome context

7q: 5413021-5413079 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4001d

Mature cin-miR-4001d-5p

• Accession: MIMAT0016452
• Description: Ciona intestinalis cin-miR-4001d-5p mature miRNA
• Sequence: 1 - UGGAACUUGUUUUGAACAGG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4001d-3p

• Accession: MIMAT0016453
• Description: Ciona intestinalis cin-miR-4001d-3p mature miRNA
• Sequence: 38 - GCCUGCUCAAACUAGUUCUCGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39