miRBase entry: cin-mir-4006a-2

Stem-loop cin-mir-4006a-2


Accession
MI0015536
Description
Ciona intestinalis cin-mir-4006a-2 precursor miRNA


Sequence

91796 reads, 29707 reads per million, 2 experiments
UGGAACAUGUAAGUAAGGGCugcccaugugcaGUCGUUACCAACAUGUUUUAC
((((((((((..((((.((((((......)))))).))))..)))))))))).

Structure
-          AA    G      cc 
 UGGAACAUGU  GUAA GGCugc  a
 ||||||||||  |||| ||||||   
 AUUUUGUACA  CAUU CUGacg  u
C          AC    G      ug 


Annotation confidence Not enough data
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Genome context
7q: 5410620-5410672 [-]
Clustered miRNAs
22 other miRNAs are < 10 kb from cin-mir-4006a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4006a-5p

Accession MIMAT0016478
Description Ciona intestinalis cin-miR-4006a-5p mature miRNA
Sequence 1 - UGGAACAUGUAAGUAAGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4006a-2-3p

Accession MIMAT0016968
Description Ciona intestinalis cin-miR-4006a-2-3p mature miRNA
Sequence 33 - GUCGUUACCAACAUGUUUUAC - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39