miRBase entry: cin-mir-4006g

Stem-loop cin-mir-4006g


Accession
MI0015539
Description
Ciona intestinalis cin-mir-4006g precursor miRNA


Sequence

20313 reads, 6590 reads per million, 2 experiments
GGGAACAUUCCGGUAAGGGAcguauuuaacUUUCCUUUCCACAAUGUUCG
..(((((((..((.((((((.((.....)).)))))).))..))))))).

Structure
GG       CC  U      c  a 
  GAACAUU  GG AAGGGA gu u
  |||||||  || |||||| || u
  CUUGUAA  CC UUCCUU ca u
-G       CA  U      U  a 


Annotation confidence Not enough data
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Genome context
7q: 5413284-5413333 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4006g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4006g-5p

Accession MIMAT0016484
Description Ciona intestinalis cin-miR-4006g-5p mature miRNA
Sequence 1 - GGGAACAUUCCGGUAAGGGA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4006g-3p

Accession MIMAT0016485
Description Ciona intestinalis cin-miR-4006g-3p mature miRNA
Sequence 31 - UUUCCUUUCCACAAUGUUCG - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39