Stem-loop cin-mir-1502c

Accession

MI0015543

Description

Ciona intestinalis cin-mir-1502c precursor miRNA

Sequence

41167 reads, 16083 reads per million, 2 experiments

UGAACUUUACCAUGAAAAAGccuguuaauugaaaugcAGGGUUUUUCAUGGAGUUCG
.(((((...((((((((((.(((((..........))))).))))))))))))))).

Structure

U     UUA          G     uaau 
 GAACU   CCAUGAAAAA ccugu    u
 |||||   |||||||||| |||||     
 CUUGA   GGUACUUUUU GGAcg    g
G     ---          G     uaaa 

Annotation confidence High

Genome context

3p: 1540568-1540624 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-1502c

Mature cin-miR-1502c-5p

• Accession: MIMAT0016491
• Description: Ciona intestinalis cin-miR-1502c-5p mature miRNA
• Sequence: 1 - UGAACUUUACCAUGAAAAAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-1502c-3p

• Accession: MIMAT0016492
• Description: Ciona intestinalis cin-miR-1502c-3p mature miRNA
• Sequence: 38 - AGGGUUUUUCAUGGAGUUCG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39