Stem-loop cin-mir-1502d

Accession

MI0015544

Description

Ciona intestinalis cin-mir-1502d precursor miRNA

Sequence

50838 reads, 19864 reads per million, 2 experiments

UGAACUUUCCCAGGAAUAAGucuuucuuuguuaugucagACUUACUCCCGGGAGUUCUC
.((((..((((.(((.(((((((..(........)..))))))).))).))))))))..

Structure

-U    UU    A   A       uu uuu 
  GAAC  UCCC GGA UAAGucu  c   g
  ||||  |||| ||| |||||||  |    
  CUUG  AGGG CCU AUUCAga  g   u
CU    --    C   C       cu uau 

Annotation confidence Not enough data

Genome context

3p: 1538443-1538501 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-1502d

Mature cin-miR-1502d-5p

• Accession: MIMAT0016493
• Description: Ciona intestinalis cin-miR-1502d-5p mature miRNA
• Sequence: 1 - UGAACUUUCCCAGGAAUAAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-1502d-3p

• Accession: MIMAT0016494
• Description: Ciona intestinalis cin-miR-1502d-3p mature miRNA
• Sequence: 40 - ACUUACUCCCGGGAGUUCUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39