miRBase entry: cin-mir-4009c

Stem-loop cin-mir-4009c


Accession
MI0015550
Description
Ciona intestinalis cin-mir-4009c precursor miRNA


Sequence

13 reads, 5 reads per million, 2 experiments
gguacacugaauugcaccagcuuauuauucugcUAUUGCACUUUUACUGUACC
((((((.((((.((((..(((..........)))..))))..)))).))))))

Structure
      c    -u    cc   uuau 
gguaca ugaa  ugca  agc    u
|||||| ||||  ||||  |||     
CCAUGU AUUU  ACGU  Ucg    a
      C    UC    UA   ucuu 


Annotation confidence Not enough data
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Genome context
1q: 161017-161069 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4009c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4009c-3p

Accession MIMAT0016505
Description Ciona intestinalis cin-miR-4009c-3p mature miRNA
Sequence 34 - UAUUGCACUUUUACUGUACC - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39