miRBase entry: cin-mir-4025

Stem-loop cin-mir-4025


Accession
MI0015576
Description
Ciona intestinalis cin-mir-4025 precursor miRNA


Sequence

30 reads, 12 reads per million, 2 experiments
GUAUGUGUUUGGUGAAAAGAauuuuucaaaaaaucuaguucuuuuuaaaccaucuac
....(((..((((((((((((((.............))))))))))..))))..)))

Structure
GUAU   UU    --          uuuca 
    GUG  UGGU  GAAAAGAauu     a
    |||  ||||  ||||||||||     a
    cau  acca  uuuuucuuga     a
----   cu    aa          ucuaa 


Annotation confidence Not enough data
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Genome context
9p: 2209039-2209095 [-]

Database links

Mature cin-miR-4025-5p

Accession MIMAT0016541
Description Ciona intestinalis cin-miR-4025-5p mature miRNA
Sequence 1 - GUAUGUGUUUGGUGAAAAGA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39