Stem-loop cin-mir-4032

Accession

MI0015583

Description

Ciona intestinalis cin-mir-4032 precursor miRNA

Sequence

23611 reads, 8390 reads per million, 2 experiments

ACACAGUGAUGAGAGUUAGCugguguauaaucugcCAGCUCUAUCGUCAUUGUAU
..((((((((((.((..((((((((.......)))))))))).))))))))))..

Structure

AC          G  UU        ua 
  ACAGUGAUGA AG  AGCuggug  u
  |||||||||| ||  ||||||||  a
  UGUUACUGCU UC  UCGACcgu  a
UA          A  --        cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cin-miR-4032-5p

• Accession: MIMAT0016553
• Description: Ciona intestinalis cin-miR-4032-5p mature miRNA
• Sequence: 1 - ACACAGUGAUGAGAGUUAGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4032-3p

• Accession: MIMAT0016554
• Description: Ciona intestinalis cin-miR-4032-3p mature miRNA
• Sequence: 36 - CAGCUCUAUCGUCAUUGUAU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39