miRBase entry: cin-mir-4035

Stem-loop cin-mir-4035


Accession
MI0015586
Description
Ciona intestinalis cin-mir-4035 precursor miRNA


Sequence

751 reads, 280 reads per million, 2 experiments
GGCAAUAUCACGAUGUGCUGUUGauuuagugaacacgACAGACACUGUGACAUUGCA
.(((((.(((((.(((.((((((............))))))))).))))).))))).

Structure
G     A     A   G      auuua 
 GCAAU UCACG UGU CUGUUG     g
 ||||| ||||| ||| ||||||      
 CGUUA AGUGU ACA GACAgc     u
A     C     C   -      acaag 


Annotation confidence Not enough data
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Genome context
6q: 1459380-1459436 [+]

Database links

Mature cin-miR-4035-5p

Accession MIMAT0016559
Description Ciona intestinalis cin-miR-4035-5p mature miRNA
Sequence 1 - GGCAAUAUCACGAUGUGCUGUUG - 23
Evidence experimental
Illumina [1]

Mature cin-miR-4035-3p

Accession MIMAT0016560
Description Ciona intestinalis cin-miR-4035-3p mature miRNA
Sequence 38 - ACAGACACUGUGACAUUGCA - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39