miRBase entry: cin-mir-4039

Stem-loop cin-mir-4039


Accession
MI0015590
Description
Ciona intestinalis cin-mir-4039 precursor miRNA


Sequence

11733 reads, 4698 reads per million, 2 experiments
UAUAUGAAGAUGUAAGCUAUucuauauugaAUAGUUUGUUUCUUUGUAUU
.(((((((((..((((((((((......))))))))))..))))))))).

Structure
U         UG          ua 
 AUAUGAAGA  UAAGCUAUuc  u
 |||||||||  ||||||||||   
 UAUGUUUCU  GUUUGAUAag  a
U         UU          uu 


Annotation confidence Not enough data
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Genome context
scaffold_65: 663235-663284 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4039
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4039-5p

Accession MIMAT0016567
Description Ciona intestinalis cin-miR-4039-5p mature miRNA
Sequence 1 - UAUAUGAAGAUGUAAGCUAU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4039-3p

Accession MIMAT0016568
Description Ciona intestinalis cin-miR-4039-3p mature miRNA
Sequence 31 - AUAGUUUGUUUCUUUGUAUU - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39