miRBase entry: cin-mir-4040

Stem-loop cin-mir-4040


Accession
MI0015591
Description
Ciona intestinalis cin-mir-4040 precursor miRNA


Sequence

2143 reads, 762 reads per million, 2 experiments
UCGUCUUUCUGCAUAUGGUUGUUauguguccaaCAACCAGAUCAGAAAGUCGA
(((.(((((((.((.((((((((........)))))))).))))))))).)))

Structure
   U       C  A        aug 
UCG CUUUCUG AU UGGUUGUU   u
||| ||||||| || ||||||||    
AGC GAAAGAC UA ACCAACaa   g
   U       -  G        ccu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4040-5p

Accession MIMAT0016569
Description Ciona intestinalis cin-miR-4040-5p mature miRNA
Sequence 1 - UCGUCUUUCUGCAUAUGGUUGUU - 23
Evidence experimental
Illumina [1]

Mature cin-miR-4040-3p

Accession MIMAT0016570
Description Ciona intestinalis cin-miR-4040-3p mature miRNA
Sequence 34 - CAACCAGAUCAGAAAGUCGA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39