miRBase entry: cin-mir-4043

Stem-loop cin-mir-4043


Accession
MI0015594
Description
Ciona intestinalis cin-mir-4043 precursor miRNA


Sequence

307 reads, 111 reads per million, 2 experiments
CGUUCAGUCAUUCUAUGCAUacgugcuauaccgguUUGCAUAGAUUGUCCGAACA
.((((.(.((.((((((((.((...........)).)))))))).)).).)))).

Structure
C    A U  U        U  gugc 
 GUUC G CA UCUAUGCA ac    u
 |||| | || |||||||| ||    a
 CAAG C GU AGAUACGU ug    u
A    C U  U        U  gcca 


Annotation confidence Not enough data
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Genome context
14p: 1742286-1742340 [+]

Database links

Mature cin-miR-4043-5p

Accession MIMAT0016575
Description Ciona intestinalis cin-miR-4043-5p mature miRNA
Sequence 1 - CGUUCAGUCAUUCUAUGCAU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4043-3p

Accession MIMAT0016576
Description Ciona intestinalis cin-miR-4043-3p mature miRNA
Sequence 36 - UUGCAUAGAUUGUCCGAACA - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39