Stem-loop cin-mir-4054

Accession

MI0015605

Description

Ciona intestinalis cin-mir-4054 precursor miRNA

Sequence

2152 reads, 874 reads per million, 2 experiments

UAUGAUUGAUGUUUAAUGGCucuuaacaaaaacguagAGCUUUUGACCAUCUUUCUG
...((..((((.((((.((((((..((......)))))))).)))).))))..))..

Structure

UAU  UU    U    U      ua  aa 
   GA  GAUG UUAA GGCucu  ac  a
   ||  |||| |||| ||||||  ||   
   CU  CUAC AGUU UCGAga  ug  a
-GU  UU    C    U      --  ca 

Annotation confidence Not enough data

Genome context

10q: 2148145-2148201 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cin-mir-4054

Mature cin-miR-4054-5p

• Accession: MIMAT0016597
• Description: Ciona intestinalis cin-miR-4054-5p mature miRNA
• Sequence: 1 - UAUGAUUGAUGUUUAAUGGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4054-3p

• Accession: MIMAT0016598
• Description: Ciona intestinalis cin-miR-4054-3p mature miRNA
• Sequence: 38 - AGCUUUUGACCAUCUUUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39