miRBase entry: cin-mir-4063

Stem-loop cin-mir-4063


Accession
MI0015614
Description
Ciona intestinalis cin-mir-4063 precursor miRNA


Sequence

144 reads, 52 reads per million, 2 experiments
AACACCUUAAUCACCAAUGUGauugugauaacagcaAACGCAUUGGAUUAAGGUGG
..(((((((((..((((((((.((((.......)))).))))))))))))))))).

Structure
AA         CA        a    ga 
  CACCUUAAU  CCAAUGUG uugu  u
  |||||||||  |||||||| ||||  a
  GUGGAAUUA  GGUUACGC Aacg  a
-G         --        A    ac 


Annotation confidence Not enough data
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Genome context
13q: 1420250-1420305 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4063
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4063-5p

Accession MIMAT0016614
Description Ciona intestinalis cin-miR-4063-5p mature miRNA
Sequence 1 - AACACCUUAAUCACCAAUGUG - 21
Evidence experimental
Illumina [1]

Mature cin-miR-4063-3p

Accession MIMAT0016615
Description Ciona intestinalis cin-miR-4063-3p mature miRNA
Sequence 37 - AACGCAUUGGAUUAAGGUGG - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39