miRBase entry: cin-mir-4073

Stem-loop cin-mir-4073


Accession
MI0015624
Description
Ciona intestinalis cin-mir-4073 precursor miRNA


Sequence

64 reads, 28 reads per million, 2 experiments
ACGACAAGUAGGGUCCUUUUgcgucaccaucgCAGGAUGUUCGACUUGUUGU
(((((((((((.(((((...(((.......)))))))).))..)))))))))

Structure
         --  G     UUU   uc 
ACGACAAGU  AG GUCCU   gcg  a
|||||||||  || |||||   |||  c
UGUUGUUCA  UU UAGGA   Cgc  c
         GC  G     ---   ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
13q: 2009067-2009118 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4073
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4073-5p

Accession MIMAT0016634
Description Ciona intestinalis cin-miR-4073-5p mature miRNA
Sequence 1 - ACGACAAGUAGGGUCCUUUU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4073-3p

Accession MIMAT0016635
Description Ciona intestinalis cin-miR-4073-3p mature miRNA
Sequence 33 - CAGGAUGUUCGACUUGUUGU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39