Stem-loop cin-mir-4075

Accession

MI0015626

Description

Ciona intestinalis cin-mir-4075 precursor miRNA

Sequence

438 reads, 169 reads per million, 2 experiments

GGUCCUUGAGUUCUGAGCACcucagcggccgcgcagccaccgaaaaugcggugcuagcgguuggugUAAAGAUCCAAGGGCCACC
((((((((.(.(((..(((((.....((((((..(((.((((......))))))).)))))))))))..))).)))))))))...

Structure

---        A U   GA     ucagc      gc   c    aa 
   GGUCCUUG G UCU  GCACc     ggccgc  agc accg  a
   |||||||| | |||  |||||     ||||||  ||| ||||   
   CCGGGAAC C AGA  Ugugg     uuggcg  ucg uggc  a
CCA        - U   AA     -----      -a   -    gu 

Annotation confidence Not enough data

Genome context

10p: 359813-359897 [+]

Mature cin-miR-4075-5p

• Accession: MIMAT0016638
• Description: Ciona intestinalis cin-miR-4075-5p mature miRNA
• Sequence: 1 - GGUCCUUGAGUUCUGAGCAC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4075-3p

• Accession: MIMAT0016639
• Description: Ciona intestinalis cin-miR-4075-3p mature miRNA
• Sequence: 67 - UAAAGAUCCAAGGGCCACC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39