miRBase entry: cin-mir-4077c

Stem-loop cin-mir-4077c


Accession
MI0015630
Description
Ciona intestinalis cin-mir-4077c precursor miRNA
Gene family
MIPF0000905; mir-4077


Sequence

204 reads, 89 reads per million, 2 experiments
AAGUUGGAAGUUGAUUGACUggguuugaaauauaccaguuaauugacuccaacua
.(((((((.(((((((((((((..(......)..)))))))))))))))))))).

Structure
A       A             gu ug 
 AGUUGGA GUUGAUUGACUgg  u  a
 ||||||| |||||||||||||  |   
 ucaaccu caguuaauugacc  a  a
a       -             au ua 


Annotation confidence Not enough data
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Genome context
7q: 6168570-6168624 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4077c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4077c-5p

Accession MIMAT0016644
Description Ciona intestinalis cin-miR-4077c-5p mature miRNA
Sequence 1 - AAGUUGGAAGUUGAUUGACU - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39