miRBase entry: cin-mir-4087

Stem-loop cin-mir-4087


Accession
MI0015640
Description
Ciona intestinalis cin-mir-4087 precursor miRNA


Sequence

12 reads, 5 reads per million, 2 experiments
UCAUUUCCUCACCAAUUAUGUauugcaaaagcauaACGUGGAUGUGGACUUGAUA
(((..(((.(((((.((((((.........))))))..))).)).)))..)))..

Structure
--   UU   U  -   -A      auu 
  UCA  UCC CA CCA  UUAUGU   g
  |||  ||| || |||  ||||||   c
  AGU  AGG GU GGU  Aauacg   a
AU   UC   U  A   GC      aaa 


Annotation confidence Not enough data
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Genome context
5q: 4877813-4877867 [-]

Database links

Mature cin-miR-4087-5p

Accession MIMAT0016662
Description Ciona intestinalis cin-miR-4087-5p mature miRNA
Sequence 1 - UCAUUUCCUCACCAAUUAUGU - 21
Evidence experimental
Illumina [1]

Mature cin-miR-4087-3p

Accession MIMAT0016663
Description Ciona intestinalis cin-miR-4087-3p mature miRNA
Sequence 36 - ACGUGGAUGUGGACUUGAUA - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39