Stem-loop cin-mir-4094

Accession

MI0015647

Description

Ciona intestinalis cin-mir-4094 precursor miRNA

Sequence

65 reads, 24 reads per million, 2 experiments

GUGCUCUGGGCCUCGUUGGagcuucuucuuugcucugagcugcacggugcauugcugcuagucuugaaagcaacuCCAACAGGUCUGCAUUCGGC
((((...((((((.(((((((...((((...(((...(((((((...))))..)))...)))...).)))...))))))))))))))))).....

Structure

-----    UCU      C       cuu   - uuu   cug   --    c 
     GUGC   GGGCCU GUUGGag   cuu c   gcu   agc  ugca  
     ||||   |||||| |||||||   ||| |   |||   |||  |||| g
     UACG   UCUGGA CAACCuc   gaa g   uga   ucg  acgu  
CGGCU    ---      -       aac   a uuc   ucg   uu    g 

Annotation confidence Not enough data

Genome context

1q: 4104185-4104279 [+]

Mature cin-miR-4094-5p

• Accession: MIMAT0016674
• Description: Ciona intestinalis cin-miR-4094-5p mature miRNA
• Sequence: 1 - GUGCUCUGGGCCUCGUUGG - 19
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4094-3p

• Accession: MIMAT0016675
• Description: Ciona intestinalis cin-miR-4094-3p mature miRNA
• Sequence: 76 - CCAACAGGUCUGCAUUCGGC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39