Stem-loop cin-mir-4115

Accession

MI0015669

Description

Ciona intestinalis cin-mir-4115 precursor miRNA

Sequence

7 reads, 4 reads per million, 2 experiments

CUUGUCUGCACUCCCGUUCUUUauaggccugaaguaagccaaaAGAGCGGGAGUGCAGAUAAC
.(((((((((((((((((((((...(((.........))).))))))))))))))))))))).

Structure

C                     aua   cug 
 UUGUCUGCACUCCCGUUCUUU   ggc   a
 |||||||||||||||||||||   |||   a
 AAUAGACGUGAGGGCGAGAaa   ccg   g
C                     --a   aau 

Annotation confidence Not enough data

Genome context

2q: 3083844-3083906 [+]

Mature cin-miR-4115-5p

• Accession: MIMAT0016705
• Description: Ciona intestinalis cin-miR-4115-5p mature miRNA
• Sequence: 1 - CUUGUCUGCACUCCCGUUCUUU - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4115-3p

• Accession: MIMAT0016706
• Description: Ciona intestinalis cin-miR-4115-3p mature miRNA
• Sequence: 44 - AGAGCGGGAGUGCAGAUAAC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39