miRBase entry: cin-mir-4124

Stem-loop cin-mir-4124


Accession
MI0015679
Description
Ciona intestinalis cin-mir-4124 precursor miRNA


Sequence

29 reads, 9 reads per million, 2 experiments
ACUGUAUGUGAAAAAAUAUGguaaagcuuuuuaugcuaguuuauuuuaac
........(((((.((..(((((..........)))))..)).)))))..

Structure
ACUGUAUG     A  UA     aagc 
        UGAAA AA  UGgua    u
        ||||| ||  |||||     
        auuuu uu  aucgu    u
------ca     a  ug     auuu 


Annotation confidence Not enough data
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Genome context
2q: 872297-872346 [+]

Database links

Mature cin-miR-4124-5p

Accession MIMAT0016718
Description Ciona intestinalis cin-miR-4124-5p mature miRNA
Sequence 1 - ACUGUAUGUGAAAAAAUAUG - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39