miRBase entry: cin-mir-4127

Stem-loop cin-mir-4127


Accession
MI0015682
Description
Ciona intestinalis cin-mir-4127 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
GACAGCUCGCUCAGCUGGCUgugugauaaucaacAGGCAGCUGUGAGAGAAGUUG
(((..(((.(.((((((.((((.(((...))))))).)))))).).)))..))).

Structure
-   AG   G U      G    g   u 
 GAC  CUC C CAGCUG CUgu uga  
 |||  ||| | |||||| |||| ||| a
 UUG  GAG G GUCGAC GAca acu  
G   AA   A U      G    -   a 


Annotation confidence Not enough data
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Genome context
5q: 3342682-3342736 [+]

Database links

Mature cin-miR-4127-5p

Accession MIMAT0016721
Description Ciona intestinalis cin-miR-4127-5p mature miRNA
Sequence 1 - GACAGCUCGCUCAGCUGGCU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4127-3p

Accession MIMAT0016722
Description Ciona intestinalis cin-miR-4127-3p mature miRNA
Sequence 35 - AGGCAGCUGUGAGAGAAGUUG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39