miRBase entry: cin-mir-4141

Stem-loop cin-mir-4141


Accession
MI0015696
Description
Ciona intestinalis cin-mir-4141 precursor miRNA


Sequence

3 reads, 2 reads per million, 1 experiments
UGGUCACAGCUGUUUGCACauuaugauaucacaaUGGCAAUCGCCUGCUGACCG
.((((((((.((.((((.((((.((....)).)))))))).)).))).))))).

Structure
U     -   C  U    A    a  a 
 GGUCA CAG UG UUGC Cauu ug u
 ||||| ||| || |||| |||| ||  
 CCAGU GUC GC AACG GUaa ac a
G     C   C  U    -    c  u 


Annotation confidence Not enough data
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Genome context
6q: 1187422-1187475 [+]

Database links

Mature cin-miR-4141-5p

Accession MIMAT0016740
Description Ciona intestinalis cin-miR-4141-5p mature miRNA
Sequence 1 - UGGUCACAGCUGUUUGCAC - 19
Evidence experimental
Illumina [1]

Mature cin-miR-4141-3p

Accession MIMAT0016741
Description Ciona intestinalis cin-miR-4141-3p mature miRNA
Sequence 35 - UGGCAAUCGCCUGCUGACCG - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39