miRBase entry: cin-mir-4166

Stem-loop cin-mir-4166


Accession
MI0015721
Description
Ciona intestinalis cin-mir-4166 precursor miRNA


Sequence

7 reads, 2 reads per million, 2 experiments
UGGGAAAAUAUUAAAUGGAguuauaaauuugugaaaguaaucauuuagauuuuauuuuccuuuaaugaaaaauuuca
.(((((((((((((((((..(((((....)))))......))))))))....)))))))))....((((....))))

Structure
---------------U         ----        ----Ag     a 
                GGGAAAAUA    UUAAAUGG      uuaua a
                |||||||||    ||||||||      |||||  
                uccuuuuau    gauuuacu      agugu u
acuuuaaaaaguaauu         uuua        aaugaa     u 


Annotation confidence Not enough data
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Genome context
8q: 4232350-4232426 [+]

Database links

Mature cin-miR-4166-5p

Accession MIMAT0016774
Description Ciona intestinalis cin-miR-4166-5p mature miRNA
Sequence 1 - UGGGAAAAUAUUAAAUGGA - 19
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39