miRBase entry: cin-mir-4182

Stem-loop cin-mir-4182


Accession
MI0015738
Description
Ciona intestinalis cin-mir-4182 precursor miRNA


Sequence

4 reads, 2 reads per million, 1 experiments
CAUAAUGGAGGUUUUUUACUagugccaaaaauacuggUCAAAAAAUCUGCAGAAUG
(((..((.((((((((((((((((.......))))))).))))))))).))..)))

Structure
   AA  G         -       cc 
CAU  UG AGGUUUUUU ACUagug  a
|||  || ||||||||| |||||||  a
GUA  AC UCUAAAAAA Uggucau  a
   AG  G         C       aa 


Annotation confidence Not enough data
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Genome context
10p: 898374-898429 [+]

Database links

Mature cin-miR-4182-5p

Accession MIMAT0016796
Description Ciona intestinalis cin-miR-4182-5p mature miRNA
Sequence 1 - CAUAAUGGAGGUUUUUUACU - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4182-3p

Accession MIMAT0016797
Description Ciona intestinalis cin-miR-4182-3p mature miRNA
Sequence 38 - UCAAAAAAUCUGCAGAAUG - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39