miRBase entry: cin-mir-4187

Stem-loop cin-mir-4187


Accession
MI0015744
Description
Ciona intestinalis cin-mir-4187 precursor miRNA


Sequence

7 reads, 4 reads per million, 2 experiments
UUUGGUGUUGUGCUGUGCAAcuuauaucaggaacauuauuuauaaagugauugugaaauacaguaauaagauuguacauuguauuaauaccuua
...((((((((((((((((((((((.(((.((.((((........)))).)).))).........))))).)))))))..))).)))))))...

Structure
UUU       -   --       -     --------a   g  a    auu 
   GGUGUUG UGC  UGUGCAA cuuau         uca ga cauu   u
   ||||||| |||  ||||||| |||||         ||| || ||||    
   ccauaau aug  acauguu gaaua         agu uu guga   a
auu       u   uu       a     augacauaa   g  a    aau 


Annotation confidence Not enough data
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Genome context
scaffold_1825: 7369-7462 [+]

Database links

Mature cin-miR-4187-5p

Accession MIMAT0016805
Description Ciona intestinalis cin-miR-4187-5p mature miRNA
Sequence 1 - UUUGGUGUUGUGCUGUGCAA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39