miRBase entry: cin-mir-4196

Stem-loop cin-mir-4196


Accession
MI0015753
Description
Ciona intestinalis cin-mir-4196 precursor miRNA


Sequence

4 reads, 2 reads per million, 1 experiments
ACUCCAAAACAGAGCACAGCGggacuacacaugcucguagucccgcgggguuccuuuuucgagu
((((.((((..((((...((((((((((........))))))))))...))))..)))).))))

Structure
    C    CA    ACA          aca 
ACUC AAAA  GAGC   GCGggacuac   u
|||| ||||  ||||   ||||||||||    
ugag uuuu  cuug   cgcccugaug   g
    c    uc    ggg          cuc 


Annotation confidence Not enough data
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Genome context
scaffold_2935: 4599-4662 [+]

Database links

Mature cin-miR-4196-5p

Accession MIMAT0016815
Description Ciona intestinalis cin-miR-4196-5p mature miRNA
Sequence 1 - ACUCCAAAACAGAGCACAGCG - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39