miRBase entry: cin-mir-4200

Stem-loop cin-mir-4200


Accession
MI0015757
Description
Ciona intestinalis cin-mir-4200 precursor miRNA


Sequence

5 reads, 2 reads per million, 2 experiments
CACUAAAAUGAGGGACAGAGagaaacuauuuucCCUCUGUCCCUACUUUUAGUGC
((((((((..((((((((((.((((....)))).))))))))))..)))))))).

Structure
-        UG          a    c 
 CACUAAAA  AGGGACAGAG gaaa u
 ||||||||  |||||||||| ||||  
 GUGAUUUU  UCCCUGUCUC cuuu a
C        CA          C    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-miR-4200-5p

Accession MIMAT0016819
Description Ciona intestinalis cin-miR-4200-5p mature miRNA
Sequence 1 - CACUAAAAUGAGGGACAGAG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4200-3p

Accession MIMAT0016820
Description Ciona intestinalis cin-miR-4200-3p mature miRNA
Sequence 34 - CCUCUGUCCCUACUUUUAGUGC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39