miRBase entry: aly-MIR4221

Stem-loop aly-MIR4221


Accession
MI0015782
Description
Arabidopsis lyrata aly-MIR4221 precursor miRNA
Gene family
MIPF0001128; MIR4221


Sequence

14 reads, 488 reads per million, 1 experiments
cuaguauaccaguuaacaguuuuccugcuuuugaauucuugcacuagcuuccauugauagauaaugguuacauuuuggugcugcaacucuugugguagcuaguacAAGAGUUCAAAAGUAGUGAAGAuguuauuuggauaccauaua
...((((.((((.(((((.((((((((((((((((((((((.(((((((.((((.(((((..((((....))))......)))....))..)))).))))))).))))))))))))))))).)))))))))).))))))))......

Structure
---cua    a    u     g     -                 c       u    -u  ----   ----au    g 
      guau ccag uaaca uuuuc cugcuuuugaauucuug acuagcu ccau  ga    uag      aaug u
      |||| |||| ||||| ||||| ||||||||||||||||| ||||||| ||||  ||    |||      ||||  
      caua gguu auugu AGAAG GAUGAAAACUUGAGAAc ugaucga ggug  cu    guc      uuac u
auauac    -    u     -     U                 a       u    uu  caac   gugguu    a 


Annotation confidence Not enough data
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Genome context
GL348719.1: 13687003-13687149 [-]

Database links

Mature aly-miR4221

Accession MIMAT0017909
Description Arabidopsis lyrata aly-miR4221 mature miRNA
Sequence 106 - AAGAGUUCAAAAGUAGUGAAGA - 127
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103