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Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus |
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|---|---|
| PubMed ID | 20407023 |
| Authors | "Ma Z, Coruh C, Axtell MJ" |
| Journal | "Plant Cell |
| Volume | 22 |
| Pages | 1090-1103 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| aly-MIR156a | MI0014502 | 6346 | GL348716.1 | 3693766 | 3693949 | - | High |
| aly-MIR156b | MI0014503 | 6137 | GL348719.1 | 4534117 | 4534225 | - | High |
| aly-MIR156c | MI0014504 | 8124 | GL348719.1 | 4138775 | 4138876 | + | High |
| aly-MIR156d | MI0014505 | 8020 | GL348718.1 | 4353135 | 4353252 | - | High |
| aly-MIR156e | MI0014506 | 5300 | GL348718.1 | 4871349 | 4871498 | + | - |
| aly-MIR156f | MI0014507 | 5230 | GL348718.1 | 11884572 | 11884799 | + | - |
| aly-MIR156h | MI0014509 | 105 | GL348720.1 | 17184369 | 17184467 | - | - |
| aly-MIR157a | MI0014510 | 6834 | GL348714.1 | 11818143 | 11818265 | - | - |
| aly-MIR157c | MI0014512 | 7218 | GL348715.1 | 7799851 | 7800143 | - | - |
| aly-MIR157d | MI0014513 | 244 | GL348713.1 | 24813775 | 24814030 | - | - |
| aly-MIR158a | MI0014514 | 10112 | GL348715.1 | 4310355 | 4310449 | - | High |
| aly-MIR159a | MI0014515 | 156102 | GL348714.1 | 15958623 | 15958844 | - | High |
| aly-MIR159b | MI0014516 | 80300 | GL348713.1 | 7594092 | 7594293 | + | High |
| aly-MIR319a | MI0014518 | 35 | GL348719.1 | 7941288 | 7941508 | - | - |
| aly-MIR319b | MI0014519 | 384 | GL348719.1 | 21388787 | 21389032 | + | - |
| aly-MIR319c | MI0014520 | 139 | GL348716.1 | 19899133 | 19899403 | + | - |
| aly-MIR160a | MI0014521 | 4393 | GL348716.1 | 18997241 | 18997398 | + | - |
| aly-MIR160b | MI0014522 | 3731 | GL348719.1 | 11280816 | 11280940 | - | - |
| aly-MIR160c | MI0014523 | 4219 | GL348720.1 | 677267 | 677385 | + | - |
| aly-MIR161 | MI0014524 | 9658 | GL348713.1 | 24491110 | 24491231 | + | - |
| aly-MIR162a | MI0014525 | 2824 | GL348718.1 | 3221153 | 3221380 | - | - |
| aly-MIR162b | MI0014526 | 2859 | GL348718.1 | 9808781 | 9808964 | - | - |
| aly-MIR164a | MI0014527 | 3312 | GL348716.1 | 23120175 | 23120253 | + | - |
| aly-MIR165a | MI0014530 | 35 | GL348713.1 | 449074 | 449221 | + | - |
| aly-MIR165b | MI0014531 | 0 | GL348718.1 | 24606419 | 24606606 | + | - |
| aly-MIR166a | MI0014532 | 3975 | GL348716.1 | 22684209 | 22684375 | + | - |
| aly-MIR166b | MI0014533 | 3975 | GL348717.1 | 20552770 | 20552917 | + | - |
| aly-MIR166c | MI0014534 | 3975 | GL348718.1 | 3626989 | 3627109 | + | - |
| aly-MIR166d | MI0014535 | 3975 | GL348718.1 | 3632178 | 3632290 | + | - |
| aly-MIR166e | MI0014536 | 3905 | GL348719.1 | 21195577 | 21195776 | + | - |
| aly-MIR166f | MI0014537 | 3766 | GL348720.1 | 4172055 | 4172159 | - | - |
| aly-MIR166g | MI0014538 | 3731 | GL348720.1 | 21095446 | 21095576 | + | - |
| aly-MIR167a | MI0014539 | 101185 | GL348715.1 | 10278871 | 10279008 | + | High |
| aly-MIR167b | MI0014540 | 99895 | GL348717.1 | 21158356 | 21158550 | + | - |
| aly-MIR167c | MI0014541 | 0 | GL348715.1 | 1657189 | 1657347 | - | - |
| aly-MIR167d | MI0014542 | 7497 | GL348713.1 | 16567499 | 16567825 | - | - |
| aly-MIR168a | MI0014543 | 10704 | GL348719.1 | 10245606 | 10245760 | - | High |
| aly-MIR168b | MI0014544 | 8821 | GL348720.1 | 2067187 | 2067362 | + | - |
| aly-MIR169a | MI0014545 | 1918 | GL348715.1 | 5439432 | 5439694 | - | - |
| aly-MIR169b | MI0014546 | 139 | GL348718.1 | 10974240 | 10974412 | + | - |
| aly-MIR169c | MI0014547 | 70 | GL348719.1 | 23073353 | 23073644 | + | - |
| aly-MIR169d | MI0014548 | 1116 | GL348713.1 | 28725944 | 28726098 | - | - |
| aly-MIR169e | MI0014549 | 1116 | GL348713.1 | 28728962 | 28729135 | + | - |
| aly-MIR169f | MI0014550 | 453 | GL348715.1 | 6024138 | 6024321 | - | - |
| aly-MIR169g | MI0014551 | 941 | GL348719.1 | 9192991 | 9193192 | + | - |
| aly-MIR169h | MI0014552 | 139 | GL348713.1 | 8198473 | 8198677 | - | - |
| aly-MIR169i | MI0014553 | 314 | GL348717.1 | 3130574 | 3130783 | - | - |
| aly-MIR169j | MI0014554 | 314 | GL348717.1 | 3130897 | 3131196 | - | - |
| aly-MIR169k | MI0014555 | 174 | GL348717.1 | 3143745 | 3143947 | - | - |
| aly-MIR169l | MI0014556 | 349 | GL348717.1 | 3149048 | 3149319 | - | - |
| aly-MIR169m | MI0014557 | 209 | GL348717.1 | 3151345 | 3151574 | - | - |
| aly-MIR169n | MI0014558 | 418 | GL348717.1 | 3151664 | 3151915 | - | - |
| aly-MIR170 | MI0014559 | 105 | GL348720.1 | 22899701 | 22899912 | + | - |
| aly-MIR171a | MI0014560 | 2232 | GL348717.1 | 15611064 | 15611261 | + | - |
| aly-MIR171b | MI0014561 | 1360 | GL348713.1 | 4720122 | 4720258 | - | High |
| aly-MIR171c | MI0014562 | 2057 | GL348714.1 | 1951192 | 1951302 | + | High |
| aly-MIR172a | MI0014563 | 95258 | GL348716.1 | 12144107 | 12144255 | + | High |
| aly-MIR172b | MI0014564 | 95397 | GL348718.1 | 1397230 | 1397375 | - | - |
| aly-MIR172c | MI0014565 | 1081 | GL348715.1 | 4586846 | 4586978 | - | - |
| aly-MIR172d | MI0014566 | 1081 | GL348717.1 | 17548801 | 17548963 | + | - |
| aly-MIR172e | MI0014567 | 2615 | GL348720.1 | 19150533 | 19150665 | + | - |
| aly-MIR173a | MI0014568 | 6660 | GL348715.1 | 10517134 | 10517233 | + | High |
| aly-MIR390a | MI0014569 | 314 | GL348716.1 | 18611034 | 18611162 | + | - |
| aly-MIR390b | MI0014570 | 279 | GL348720.1 | 18617960 | 18618086 | + | - |
| aly-MIR391 | MI0014571 | 6172 | GL348720.1 | 19524569 | 19524671 | + | - |
| aly-MIR393a | MI0014572 | 105 | GL348716.1 | 19396119 | 19396265 | + | - |
| aly-MIR393b | MI0014573 | 593 | GL348717.1 | 17660786 | 17660954 | + | - |
| aly-MIR394a | MI0014574 | 732 | GL348713.1 | 8699173 | 8699392 | + | - |
| aly-MIR394b | MI0014575 | 732 | GL348714.1 | 17011842 | 17012001 | + | - |
| aly-MIR395b | MI0014576 | None | GL348713.1 | 10964919 | 10965029 | - | - |
| aly-MIR395d | MI0014578 | None | GL348714.1 | 13997965 | 13998104 | - | - |
| aly-MIR395e | MI0014579 | None | GL348714.1 | 14000953 | 14001057 | - | - |
| aly-MIR395f | MI0014580 | None | GL348714.1 | 14002867 | 14002993 | + | - |
| aly-MIR396b | MI0014582 | 20746 | GL348719.1 | 18203535 | 18203722 | + | High |
| aly-MIR397a | MI0014583 | 35 | GL348718.1 | 22804022 | 22804147 | + | - |
| aly-MIR397b | MI0014584 | 35 | GL348719.1 | 14978335 | 14978465 | - | - |
| aly-MIR398a | MI0014585 | 2650 | GL348717.1 | 1852452 | 1852633 | + | - |
| aly-MIR398b | MI0014586 | 174 | GL348718.1 | 5876498 | 5876639 | + | - |
| aly-MIR399a | MI0014588 | 0 | GL348713.1 | 12890901 | 12891062 | + | - |
| aly-MIR399b | MI0014589 | 174 | GL348714.1 | 1307899 | 1308052 | + | - |
| aly-MIR399c | MI0014590 | 349 | GL348720.1 | 20345020 | 20345144 | + | - |
| aly-MIR399d | MI0014591 | 0 | GL348716.1 | 16217498 | 16217632 | - | - |
| aly-MIR399e | MI0014592 | 0 | GL348716.1 | 16218063 | 16218253 | + | - |
| aly-MIR399f | MI0014593 | 0 | GL348716.1 | 16219612 | 16219778 | + | - |
| aly-MIR400 | MI0014594 | 0 | GL348713.1 | 14934184 | 14934360 | + | - |
| aly-MIR403a | MI0014595 | 1778 | GL348716.1 | 22991768 | 22991892 | + | - |
| aly-MIR408 | MI0014596 | 0 | GL348716.1 | 22869851 | 22870061 | + | - |
| aly-MIR472 | MI0014597 | 767 | GL348713.1 | 4993634 | 4993866 | - | - |
| aly-MIR771 | MI0014598 | None | GL348717.1 | 16404124 | 16404228 | - | - |
| aly-MIR774a | MI0014599 | None | GL348714.1 | 3372430 | 3372563 | - | - |
| aly-MIR822 | MI0014601 | 593 | GL348718.1 | 1060462 | 1060749 | - | - |
| aly-MIR824 | MI0014603 | 8159 | GL348719.1 | 7604265 | 7604918 | - | High |
| aly-MIR825 | MI0014604 | 69665 | GL348716.1 | 6095652 | 6095803 | + | - |
| aly-MIR827 | MI0014605 | 523 | GL348717.1 | 19566549 | 19566745 | - | - |
| aly-MIR828 | MI0014606 | 70 | GL348719.1 | 6065263 | 6065461 | - | - |
| aly-MIR829 | MI0014607 | None | GL348713.1 | 15049338 | 15049517 | - | - |
| aly-MIR831 | MI0014608 | None | GL348716.1 | 2376177 | 2376361 | + | - |
| aly-MIR834 | MI0014610 | None | GL348718.1 | 3227917 | 3228096 | - | - |
| aly-MIR838 | MI0014612 | 70 | GL348713.1 | 513681 | 513847 | - | - |
| aly-MIR839 | MI0014613 | 488 | GL348714.1 | 12500788 | 12501085 | - | - |
| aly-MIR840 | MI0014614 | 1674 | GL348717.1 | 995511 | 995757 | - | - |
| aly-MIR842 | MI0014615 | 244 | GL348714.1 | 2587536 | 2587692 | - | - |
| aly-MIR845a | MI0014617 | None | GL348719.1 | 8114921 | 8115035 | + | - |
| aly-MIR845b | MI0014618 | None | GL348719.1 | 8118257 | 8118368 | + | - |
| aly-MIR846 | MI0014619 | 1743 | GL348714.1 | 2586985 | 2587456 | - | - |
| aly-MIR847 | MI0014620 | 70 | GL348713.1 | 2579000 | 2579162 | + | - |
| aly-MIR856 | MI0014622 | None | GL348713.1 | 15243159 | 15243439 | + | - |
| aly-MIR859 | MI0014625 | None | GL348714.1 | 3372640 | 3372797 | - | - |
| aly-MIR860 | MI0014626 | 767 | GL348718.1 | 11824755 | 11824911 | + | - |
| aly-MIR861 | MI0014627 | None | GL348717.1 | 13692799 | 13692908 | - | - |
| aly-MIR862 | MI0014628 | 1220 | GL348716.1 | 3826645 | 3827010 | + | - |
| aly-MIR868 | MI0014629 | None | GL348715.1 | 8091568 | 8091775 | + | - |
| aly-MIR2111a | MI0014630 | None | GL348715.1 | 3692008 | 3692148 | + | - |
| aly-MIR2111b | MI0014631 | None | GL348718.1 | 474781 | 474903 | + | - |
| aly-MIR2112 | MI0014632 | None | GL348713.1 | 240436 | 240587 | + | - |
| aly-MIR395g | MI0014634 | None | GL348714.1 | 14005416 | 14005520 | - | - |
| aly-MIR395h | MI0014635 | None | GL348714.1 | 14006209 | 14006343 | + | - |
| aly-MIR399g | MI0014636 | 0 | GL348713.1 | 12882529 | 12882685 | - | - |
| aly-MIR399h | MI0014637 | 0 | GL348713.1 | 12884715 | 12884820 | + | - |
| aly-MIR399i | MI0014638 | 0 | GL348713.1 | 12888628 | 12888754 | - | - |
| aly-MIR402 | MI0014641 | 139 | GL348714.1 | 17541836 | 17542067 | + | - |
| aly-MIR837 | MI0014644 | None | GL348713.1 | 7996708 | 7996826 | + | - |
| aly-MIR851 | MI0014646 | None | GL348717.1 | 16404386 | 16404469 | - | - |
| aly-MIR774b | MI0014650 | None | GL348714.1 | 3372279 | 3372385 | - | - |
| aly-MIR3435 | MI0014651 | 2964 | GL348715.1 | 920893 | 921194 | - | - |
| aly-MIR3436 | MI0014652 | 209 | GL348713.1 | 23816604 | 23816732 | - | - |
| aly-MIR3440 | MI0014656 | 384 | GL348715.1 | 7758213 | 7758454 | + | - |
| aly-MIR3443 | MI0014659 | 139 | GL348717.1 | 2671734 | 2671868 | + | - |
| aly-MIR3445 | MI0014661 | 9275 | GL348713.1 | 7706713 | 7706931 | - | - |
| aly-MIR3446 | MI0014662 | 105 | GL348714.1 | 16331891 | 16332181 | - | - |
| aly-MIR3448 | MI0014664 | 314 | GL348719.1 | 4173317 | 4173415 | - | - |
| aly-MIR395i | MI0015778 | None | GL348713.1 | 10978703 | 10978795 | + | - |
| aly-MIR841 | MI0015780 | 0 | GL348719.1 | 15200291 | 15200504 | - | - |
| aly-MIR1887 | MI0015781 | None | GL348719.1 | 9352612 | 9352674 | - | - |
| aly-MIR4221 | MI0015782 | 488 | GL348719.1 | 13687003 | 13687149 | - | - |
| aly-MIR4222 | MI0015783 | 384 | GL348717.1 | 12382831 | 12382996 | - | - |
| aly-MIR4223 | MI0015784 | 174 | GL348713.1 | 24251060 | 24251204 | - | - |
| aly-MIR4224 | MI0015785 | 70 | GL348713.1 | 24611224 | 24611359 | + | - |
| aly-MIR4225 | MI0015786 | None | GL348713.1 | 25490071 | 25490220 | + | - |
| aly-MIR4226 | MI0015787 | None | GL348714.1 | 1204559 | 1204724 | + | - |
| aly-MIR4227 | MI0015788 | 35 | GL348714.1 | 2959485 | 2959606 | - | - |
| aly-MIR4228 | MI0015789 | 70 | GL348714.1 | 17393793 | 17393951 | + | - |
| aly-MIR4229 | MI0015790 | 0 | GL348715.1 | 6816117 | 6816259 | - | - |
| aly-MIR4230 | MI0015791 | None | GL348715.1 | 6818689 | 6818807 | - | - |
| aly-MIR4231 | MI0015792 | 209 | GL348715.1 | 22209462 | 22209579 | + | - |
| aly-MIR3444b | MI0015793 | 35 | GL348716.1 | 2558111 | 2558239 | - | - |
| aly-MIR4232 | MI0015794 | None | GL348716.1 | 23154953 | 23155097 | + | - |
| aly-MIR4233 | MI0015795 | None | GL348718.1 | 12714347 | 12714510 | + | - |
| aly-MIR4234 | MI0015796 | 314 | GL348717.1 | 15135754 | 15135895 | - | - |
| aly-MIR4235 | MI0015797 | 35 | GL348717.1 | 17278055 | 17278197 | + | - |
| aly-MIR4236 | MI0015798 | 35 | GL348718.1 | 6972054 | 6972202 | - | - |
| aly-MIR4237 | MI0015799 | None | GL348716.1 | 2528975 | 2529100 | - | - |
| aly-MIR4238 | MI0015800 | None | GL348719.1 | 4417749 | 4417870 | + | - |
| aly-MIR4239 | MI0015801 | None | GL348719.1 | 9366490 | 9366611 | - | - |
| aly-MIR4240 | MI0015802 | None | GL348719.1 | 10082347 | 10082550 | + | - |
| aly-MIR4241 | MI0015803 | 0 | GL348719.1 | 14829014 | 14829198 | + | - |
| aly-MIR4242 | MI0015804 | 35 | GL348719.1 | 19830812 | 19830992 | + | - |
| aly-MIR4243 | MI0015805 | None | GL348720.1 | 11472000 | 11472178 | + | - |
| aly-MIR4244 | MI0015806 | None | GL348720.1 | 11474457 | 11474563 | + | - |
| aly-MIR4245 | MI0015807 | 35 | GL348720.1 | 14956933 | 14957091 | + | - |
| aly-MIR4246 | MI0015808 | None | GL348720.1 | 15703857 | 15703967 | + | - |
| aly-MIR4247 | MI0015809 | 384 | GL348720.1 | 21909877 | 21910016 | - | - |
| aly-MIR4248a | MI0015810 | 70 | GL348713.1 | 5411335 | 5411525 | - | - |
| aly-MIR4248b | MI0015811 | 70 | GL348719.1 | 1283584 | 1283780 | - | - |
| aly-MIR4248c | MI0015812 | 70 | GL348720.1 | 4235360 | 4235537 | - | - |
| aly-MIR4249 | MI0015813 | None | GL348714.1 | 2250562 | 2250714 | - | - |
| aly-MIR4250 | MI0015814 | 209 | GL348714.1 | 17310952 | 17311076 | - | - |
| ath-MIR4221 | MI0015815 | None | chr4 | 8460516 | 8460662 | + | - |
| ath-MIR4227 | MI0015816 | None | chr1 | 22372670 | 22372790 | + | - |
| ath-MIR4228 | MI0015817 | None | chr1 | 28889375 | 28889532 | + | - |
| ath-MIR3440b | MI0015818 | None | chr3 | 6217476 | 6217600 | + | - |
| ath-MIR4239 | MI0015819 | None | chr4 | 11368752 | 11368874 | + | - |
| ath-MIR4240 | MI0015820 | None | chr4 | 10711558 | 10711762 | - | - |
| ath-MIR4243 | MI0015821 | None | chr5 | 19567208 | 19567386 | + | - |
| aly-MIR172f | MI0026011 | 1081 | GL349377.1 | 3079 | 3211 | - | - |
| aly-MIR166h | MI0026012 | 3766 | GL349043.1 | 5720 | 5824 | - | - |
| aly-MIR2111c | MI0026013 | None | GL348768.1 | 2630 | 2770 | - | - |
| aly-MIR403b | MI0026014 | 1778 | GL348933.1 | 4999 | 5123 | + | - |
| aly-MIR173b | MI0026015 | 6660 | GL348813.1 | 3737 | 3836 | - | High |
| aly-MIR399j | MI0015779 | 0 | None | None | - |