Stem-loop aly-MIR167a

Accession

MI0014539

Description

Arabidopsis lyrata aly-MIR167a precursor miRNA

Sequence

2902 reads, 101185 reads per million, 1 experiments

ggugcaccggcaucugaUGAAGCUGCCAGCAUGAUCUAauuagcuuucuuuauaucuguuguuguguuucauaacgaugguuaagagaugagucucgauuaGAUCAUGUUCGCAGUUUCACCcguugacugucgcacc
(((((..(((((.(.(.(((((((((.((((((((((((((((((((((((.((.(((((((((((...))))))))))).))))))).))).)).)))))))))))))).))))))))).).).)).)))..)))))

Structure

     ac   -  u u a         C              -  -   -     a  u           u 
ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAauu ag cuu ucuuu ua cuguuguugug  
|||||  ||| || | | ||||||||| |||||||||||||| || ||| ||||| || ||||||||||| u
ccacg  guc gu g C ACUUUGACG UUGUACUAGauuag uc gag agaga au gguagcaauac  
     cu   a  u c C         C              c  u   u     -  u           u 

Annotation confidence Medium

Genome context

GL348715.1: 10278871-10279008 [+]

Mature aly-miR167a-5p

• Accession: MIMAT0017473
• Description: Arabidopsis lyrata aly-miR167a-5p mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCUA - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR167a-3p

• Accession: MIMAT0017474
• Description: Arabidopsis lyrata aly-miR167a-3p mature miRNA
• Sequence: 102 - GAUCAUGUUCGCAGUUUCACC - 122
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103