Stem-loop aly-MIR398a

Accession

MI0014585

Description

Arabidopsis lyrata aly-MIR398a precursor miRNA

Sequence

76 reads, 2650 reads per million, 1 experiments

uaaucaguggaaguaaaguaugaagaaaaagagaagaacaacaggaggugaaaucucaaaGGAGUGUCAUGAGAACACAGAuccuaugguuucuuuacauuuucauugaaaccauugaguuUGUGUUCUCAGGUCACCCCUUugaaucuccccuguuccuuuauuuuaccuuaccaaaauua
.......(((((((((((((.............(((...((((((.((.((....(((((((.(((.(.(((((((((((((.(.((((((((..............)))))))).).))))))))))))).).))).))))))).)).)))))))).)))))))))).))).)))......

Structure

uaaucag   -   -       ugaagaaaaagag   aac      a  u  aauc       A   U A             c u        uuuaca 
       ugg aag uaaagua             aag   aacagg gg ga    ucaaaGG GUG C UGAGAACACAGAu c augguuuc      u
       ||| ||| |||||||             |||   |||||| || ||    ||||||| ||| | ||||||||||||| | ||||||||       
       acc uuc auuuuau             uuc   uugucc cc cu    aguUUCC CAC G ACUCUUGUGUuug g uaccaaag      u
-auuaaa   a   c       -------------   --c      -  u  ---a       C   U G             a u        uuacuu 

Annotation confidence Low

Genome context

GL348717.1: 1852452-1852633 [+]

Mature aly-miR398a-5p

• Accession: MIMAT0017565
• Description: Arabidopsis lyrata aly-miR398a-5p mature miRNA
• Sequence: 61 - GGAGUGUCAUGAGAACACAGA - 81
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR398a-3p

• Accession: MIMAT0017566
• Description: Arabidopsis lyrata aly-miR398a-3p mature miRNA
• Sequence: 122 - UGUGUUCUCAGGUCACCCCUU - 142
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103