Stem-loop aly-MIR158a

Accession

MI0014514

Description

Arabidopsis lyrata aly-MIR158a precursor miRNA MIR158

Gene
family

RF00845; MIR158

Sequence

290 reads, 10112 reads per million, 1 experiments

acgucaucucugugcuuCUUUGUCUACAAUUUUGGAAAaaguggugacgccauugcucuuUCCCAAAUGUAGACAAAGCAauaccgugaugacgu
((((((((.(.(((...(((((((((((.(((.(((((.(((((((....))))))).))))).))))))))))))))...))).).))))))))

Structure

        u u   cuu           A   U     a       a 
acgucauc c gug   CUUUGUCUACA UUU GGAAA aguggug c
|||||||| | |||   ||||||||||| ||| ||||| |||||||  
ugcaguag g cau   GAAACAGAUGU AAA CCUuu ucguuac g
        u c   aAC           -   C     c       c 

Annotation confidence High

Genome context

GL348715.1: 4310355-4310449 [-]

Mature aly-miR158a-5p

• Accession: MIMAT0017421
• Description: Arabidopsis lyrata aly-miR158a-5p mature miRNA
• Sequence: 18 - CUUUGUCUACAAUUUUGGAAA - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR158a-3p

• Accession: MIMAT0017422
• Description: Arabidopsis lyrata aly-miR158a-3p mature miRNA
• Sequence: 61 - UCCCAAAUGUAGACAAAGCA - 80
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103