Stem-loop aly-MIR860

Accession

MI0014626

Description

Arabidopsis lyrata aly-MIR860 precursor miRNA MIR860

Gene
family

RF03921; MIR860

Literature search

2 open access papers mention aly-MIR860
(6 sentences)

Sequence

2307 reads, 263.0 reads per million, 11 experiments

ucuuuucuuggagaaaugucuuggucaaauucaauAUAUAUAGUCCAAUCUAUUGAaguacuaguacaccagcucuaauaagcugauguagguaaguaguucaauAGAUUGGACUAUAUAUAUUAAauuugacuaagagauaaacuagagaaugaga
(((((((((......((.(((((((((((((.(((((((((((((((((((((((((.((((..((((.(((((......))))).))))....)))).))))))))))))))))))))))))).))))))))))))).))......))))).))))

Structure

    -     ggagaa  g             c                         g    --ag    c     cu 
ucuu uucuu      au ucuuggucaaauu aauAUAUAUAGUCCAAUCUAUUGAa uacu    uaca cagcu  a
|||| |||||      || ||||||||||||| ||||||||||||||||||||||||| ||||    |||| |||||   
agag aagag      ua agaaucaguuuaA UUAUAUAUAUCAGGUUAGAuaacuu auga    augu gucga  a
    u     aucaaa  g             A                         g    augg    a     au 

Annotation confidence Medium

Genome context

GL348718.1: 11824755-11824911 [+]

Mature aly-miR860-5p

• Accession: MIMAT0017649
• Description: Arabidopsis lyrata aly-miR860-5p mature miRNA
• Sequence: 36 - AUAUAUAGUCCAAUCUAUUGA - 56
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR860-3p

• Accession: MIMAT0017650
• Description: Arabidopsis lyrata aly-miR860-3p mature miRNA
• Sequence: 106 - AGAUUGGACUAUAUAUAUUAA - 126
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103